Puzzle PZ39 Table
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-: No true positive interaction in the predicted structure.
| Lab | Num | RMSD | DI all | INF all | INF wc | INF nwc | INF stacking | Clash Score | P-value | mcq | TM-score | best sol. | Detail |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GeneSilico4 | 1 | 3.383 | 3.656 | 0.925 | 1.000 | - | 0.894 | 0.350 | 0.00e+00 | 24.92 | 0.6440 | 1 | -> |
| Chen | 1 | 3.959 | 4.343 | 0.912 | 1.000 | 0.000 | 0.878 | 0.350 | 0.00e+00 | 16.07 | 0.5580 | 1 | -> |
| SimRNAweb | 3 | 4.821 | 5.658 | 0.852 | 0.987 | - | 0.789 | 96.460 | 0.00e+00 | 19.54 | 0.5700 | 1 | -> |
| Chen | 2 | 5.267 | 5.753 | 0.916 | 1.000 | 0.000 | 0.884 | 0.350 | 0.00e+00 | 15.51 | 0.4740 | 1 | -> |
| GeneSilico3 | 1 | 5.447 | 6.093 | 0.894 | 1.000 | 0.000 | 0.851 | 0.350 | 0.00e+00 | 21.16 | 0.4350 | 1 | -> |
| DasSWM | 5 | 5.594 | 6.191 | 0.904 | 0.987 | 0.000 | 0.884 | 2.430 | 0.00e+00 | 13.26 | 0.5040 | 1 | -> |
| Szachniuk | 1 | 5.605 | 6.169 | 0.909 | 0.987 | 0.000 | 0.887 | 7.640 | 0.00e+00 | 18.98 | 0.4580 | 1 | -> |
| SoutheRNA | 5 | 5.610 | 6.737 | 0.833 | 0.946 | 0.000 | 0.786 | 91.100 | 0.00e+00 | 19.82 | 0.4740 | 1 | -> |
| GeneSilico1 | 2 | 5.919 | 6.673 | 0.887 | 1.000 | 0.000 | 0.845 | 0.000 | 0.00e+00 | 20.34 | 0.4500 | 1 | -> |
| GeneSilico2 | 4 | 5.959 | 6.711 | 0.888 | 1.000 | 0.000 | 0.841 | 0.000 | 0.00e+00 | 21.16 | 0.4460 | 1 | -> |
| Ding | 4 | 6.446 | 7.789 | 0.828 | 0.960 | 0.000 | 0.766 | 7.640 | 0.00e+00 | 19.26 | 0.5020 | 1 | -> |
| GeneSilico2 | 2 | 6.618 | 7.437 | 0.890 | 1.000 | 0.000 | 0.846 | 0.000 | 0.00e+00 | 20.85 | 0.4500 | 1 | -> |
| Dokholyan | 2 | 6.779 | 8.011 | 0.846 | 0.932 | 0.000 | 0.819 | 103.290 | 0.00e+00 | 20.70 | 0.4710 | 1 | -> |
| RNAComposer | 4 | 6.880 | 7.882 | 0.873 | 0.974 | 0.000 | 0.831 | 16.670 | 0.00e+00 | 20.84 | 0.4380 | 1 | -> |
| DasSWM | 2 | 7.191 | 8.002 | 0.899 | 1.000 | 0.000 | 0.883 | 2.430 | 0.00e+00 | 15.14 | 0.4470 | 1 | -> |
| SoutheRNA | 10 | 7.245 | 8.634 | 0.839 | 0.960 | 0.000 | 0.795 | 97.300 | 0.00e+00 | 20.43 | 0.4480 | 1 | -> |
| Ding | 1 | 7.452 | 8.838 | 0.843 | 0.960 | 0.000 | 0.795 | 8.680 | 0.00e+00 | 18.79 | 0.4540 | 1 | -> |
| DasSWM | 3 | 7.464 | 8.314 | 0.898 | 1.000 | 0.000 | 0.875 | 4.170 | 0.00e+00 | 15.83 | 0.4410 | 1 | -> |
| SimRNAweb | 2 | 7.507 | 8.904 | 0.843 | 0.946 | - | 0.795 | 70.780 | 0.00e+00 | 20.83 | 0.4820 | 1 | -> |
| Chen | 3 | 7.649 | 8.562 | 0.893 | 1.000 | 0.000 | 0.858 | 0.000 | 0.00e+00 | 17.86 | 0.4660 | 1 | -> |
| DasSWM | 4 | 7.893 | 8.981 | 0.879 | 1.000 | 0.000 | 0.845 | 3.120 | 0.00e+00 | 16.73 | 0.3960 | 1 | -> |
| GeneSilico2 | 5 | 7.898 | 8.875 | 0.890 | 1.000 | 0.000 | 0.846 | 0.000 | 0.00e+00 | 22.10 | 0.4280 | 1 | -> |
| Perez | 3 | 7.959 | 9.299 | 0.856 | 1.000 | 0.000 | 0.792 | 1.040 | 0.00e+00 | 19.39 | 0.4330 | 1 | -> |
| DasSWM | 1 | 8.023 | 8.986 | 0.893 | 0.987 | 0.000 | 0.874 | 1.740 | 0.00e+00 | 15.21 | 0.4100 | 1 | -> |
| GeneSilico2 | 3 | 8.162 | 9.092 | 0.898 | 1.000 | 0.000 | 0.857 | 0.000 | 0.00e+00 | 22.18 | 0.4200 | 1 | -> |
| GeneSilico2 | 1 | 8.768 | 9.920 | 0.884 | 1.000 | 0.000 | 0.847 | 0.350 | 0.00e+00 | 21.45 | 0.4130 | 1 | -> |
| Perez | 10 | 8.947 | 11.745 | 0.762 | 0.889 | 0.000 | 0.717 | 1.390 | 0.00e+00 | 22.47 | 0.3450 | 1 | -> |
| Perez | 8 | 9.246 | 9.246 | -1.000 | - | - | - | 0.350 | 0.00e+00 | 22.35 | 0.3460 | 1 | -> |
| Perez | 5 | 9.757 | 13.009 | 0.750 | 0.890 | 0.000 | 0.703 | 1.040 | 0.00e+00 | 23.60 | 0.3430 | 1 | -> |
| Xiong | 4 | 10.376 | 11.224 | 0.924 | 1.000 | 0.000 | 0.904 | 11.830 | 0.00e+00 | 12.99 | 0.3910 | 1 | -> |
| Chen | 4 | 10.562 | 11.552 | 0.914 | 1.000 | 0.000 | 0.884 | 0.000 | 0.00e+00 | 20.42 | 0.4090 | 1 | -> |
| Szachniuk | 2 | 10.922 | 12.325 | 0.886 | 1.000 | 0.000 | 0.846 | 0.000 | 0.00e+00 | 18.03 | 0.4510 | 1 | -> |
| Szachniuk | 3 | 11.047 | 12.869 | 0.858 | 0.987 | 0.000 | 0.811 | 0.000 | 0.00e+00 | 18.30 | 0.3810 | 1 | -> |
| Xiong | 5 | 11.667 | 12.995 | 0.898 | 1.000 | 0.000 | 0.863 | 10.090 | 0.00e+00 | 13.13 | 0.3760 | 1 | -> |
| GeneSilico1 | 4 | 11.730 | 13.138 | 0.893 | 1.000 | 0.000 | 0.849 | 0.000 | 0.00e+00 | 20.95 | 0.3350 | 1 | -> |
| Perez | 9 | 11.846 | 11.846 | -1.000 | - | - | - | 1.040 | 0.00e+00 | 23.73 | 0.4040 | 1 | -> |
| Ding | 8 | 12.102 | 14.462 | 0.837 | 0.960 | 0.000 | 0.784 | 8.330 | 0.00e+00 | 18.34 | 0.3800 | 1 | -> |
| Ding | 2 | 12.537 | 14.925 | 0.840 | 0.960 | 0.000 | 0.788 | 11.460 | 0.00e+00 | 17.58 | 0.3030 | 1 | -> |
| Szachniuk | 4 | 13.002 | 14.771 | 0.880 | 0.987 | 0.000 | 0.836 | 7.640 | 2.22e-16 | 20.78 | 0.2940 | 1 | -> |
| Ding | 7 | 13.614 | 17.428 | 0.781 | 0.960 | 0.000 | 0.695 | 9.720 | 3.72e-15 | 18.48 | 0.3930 | 1 | -> |
| Chen | 8 | 14.426 | 16.465 | 0.876 | 0.960 | 0.000 | 0.848 | 0.000 | 1.19e-13 | 20.08 | 0.2740 | 1 | -> |
| SimRNAweb | 5 | 15.204 | 18.091 | 0.840 | 0.960 | 0.000 | 0.792 | 85.790 | 2.73e-12 | 20.16 | 0.3470 | 1 | -> |
| Xiao | 5 | 15.246 | 19.184 | 0.795 | 0.889 | 0.000 | 0.765 | 1.040 | 3.22e-12 | 22.49 | 0.2880 | 1 | -> |
| Xiao | 4 | 15.470 | 18.912 | 0.818 | 0.874 | 0.000 | 0.811 | 0.000 | 7.63e-12 | 20.62 | 0.3060 | 1 | -> |
| Xiong | 1 | 15.634 | 17.821 | 0.877 | 1.000 | 0.000 | 0.832 | 9.390 | 1.43e-11 | 13.66 | 0.2890 | 1 | -> |
| Xiao | 2 | 15.833 | 19.418 | 0.815 | 0.827 | 0.000 | 0.838 | 0.000 | 3.00e-11 | 21.72 | 0.2820 | 1 | -> |
| SoutheRNA | 7 | 15.968 | 18.911 | 0.844 | 0.960 | 0.000 | 0.797 | 90.970 | 4.94e-11 | 20.64 | 0.4140 | 1 | -> |
| Perez | 4 | 16.267 | 20.471 | 0.795 | 0.960 | 0.000 | 0.740 | 0.350 | 1.47e-10 | 21.46 | 0.2760 | 1 | -> |
| Chen | 10 | 16.380 | 19.109 | 0.857 | 0.932 | - | 0.827 | 0.000 | 2.19e-10 | 21.34 | 0.2630 | 1 | -> |
| Xiao | 3 | 16.463 | 20.480 | 0.804 | 0.903 | 0.000 | 0.776 | 0.000 | 2.94e-10 | 22.17 | 0.3140 | 1 | -> |
| Yang | 5 | 16.578 | 31.674 | 0.523 | 0.538 | 0.000 | 0.590 | 72.570 | 4.39e-10 | 37.15 | 0.2760 | 1 | -> |
| Ding | 6 | 17.065 | 20.366 | 0.838 | 0.973 | 0.000 | 0.778 | 8.330 | 2.33e-09 | 16.63 | 0.2650 | 1 | -> |
| Xiong | 2 | 17.096 | 19.001 | 0.900 | 1.000 | 0.000 | 0.867 | 6.610 | 2.58e-09 | 13.62 | 0.2990 | 1 | -> |
| Perez | 1 | 17.120 | 21.588 | 0.793 | 0.973 | 0.000 | 0.735 | 0.350 | 2.79e-09 | 22.01 | 0.2660 | 1 | -> |
| GeneSilico1 | 5 | 17.181 | 19.548 | 0.879 | 1.000 | 0.000 | 0.828 | 0.000 | 3.42e-09 | 20.80 | 0.3270 | 1 | -> |
| Yang | 3 | 17.525 | 27.649 | 0.634 | 0.669 | 0.000 | 0.655 | 53.820 | 1.05e-08 | 31.25 | 0.2720 | 1 | -> |
| RNAComposer | 5 | 17.645 | 20.982 | 0.841 | 0.960 | 0.000 | 0.790 | 10.420 | 1.54e-08 | 21.32 | 0.3520 | 1 | -> |
| RNAComposer | 2 | 17.778 | 21.523 | 0.826 | 0.946 | 0.000 | 0.783 | 10.070 | 2.34e-08 | 23.91 | 0.2610 | 1 | -> |
| Dfold | 1 | 18.073 | 28.267 | 0.639 | 0.466 | 0.000 | 0.738 | 130.300 | 5.81e-08 | 21.34 | 0.2840 | 1 | -> |
| Dfold | 4 | 18.239 | 33.911 | 0.538 | 0.331 | 0.000 | 0.650 | 117.360 | 9.60e-08 | 23.51 | 0.2560 | 1 | -> |
| Yang | 1 | 18.762 | 27.648 | 0.679 | 0.743 | 0.000 | 0.685 | 52.780 | 4.41e-07 | 32.11 | 0.4380 | 1 | -> |
| RNAComposer | 3 | 18.915 | 21.129 | 0.895 | 1.000 | 0.000 | 0.852 | 10.070 | 6.77e-07 | 17.41 | 0.3080 | 1 | -> |
| Dfold | 3 | 19.034 | 31.944 | 0.596 | 0.439 | 0.000 | 0.692 | 73.560 | 9.44e-07 | 22.21 | 0.2520 | 1 | -> |
| Dfold | 2 | 19.217 | 38.156 | 0.504 | 0.307 | 0.000 | 0.609 | 103.120 | 1.55e-06 | 23.03 | 0.2620 | 1 | -> |
| SoutheRNA | 4 | 19.247 | 23.115 | 0.833 | 0.973 | 0.000 | 0.772 | 73.910 | 1.68e-06 | 19.32 | 0.3790 | 1 | -> |
| DasEMinfo | 1 | 19.329 | 23.740 | 0.814 | 0.961 | 0.000 | 0.753 | 7.990 | 2.10e-06 | 20.20 | 0.2940 | 1 | -> |
| SoutheRNA | 3 | 19.360 | 23.667 | 0.818 | 0.946 | 0.000 | 0.761 | 98.260 | 2.28e-06 | 20.38 | 0.2810 | 1 | -> |
| Dokholyan | 3 | 19.623 | 25.272 | 0.776 | 0.919 | 0.000 | 0.713 | 98.020 | 4.54e-06 | 21.17 | 0.2430 | 1 | -> |
| Chen | 7 | 19.798 | 22.219 | 0.891 | 0.987 | 0.000 | 0.856 | 0.000 | 7.09e-06 | 19.88 | 0.2730 | 1 | -> |
| DasEMinfo | 3 | 19.910 | 22.423 | 0.888 | 1.000 | 0.000 | 0.841 | 2.430 | 9.39e-06 | 15.60 | 0.3300 | 1 | -> |
| Dokholyan | 1 | 19.975 | 23.444 | 0.852 | 0.960 | 0.000 | 0.816 | 103.750 | 1.11e-05 | 20.02 | 0.3030 | 1 | -> |
| Xiong | 3 | 20.060 | 22.056 | 0.910 | 1.000 | 0.000 | 0.882 | 8.350 | 1.36e-05 | 13.60 | 0.3110 | 1 | -> |
| DasEMinfo | 2 | 20.131 | 24.508 | 0.821 | 0.987 | 0.000 | 0.759 | 7.290 | 1.62e-05 | 19.38 | 0.3170 | 1 | -> |
| SoutheRNA | 8 | 20.316 | 24.900 | 0.816 | 0.947 | 0.000 | 0.765 | 96.390 | 2.53e-05 | 19.03 | 0.3150 | 1 | -> |
| GeneSilico1 | 3 | 20.348 | 23.293 | 0.874 | 1.000 | 0.000 | 0.832 | 0.000 | 2.73e-05 | 22.78 | 0.2420 | 1 | -> |
| DasEMinfo | 4 | 20.380 | 24.402 | 0.835 | 0.987 | 0.000 | 0.766 | 8.680 | 2.94e-05 | 20.24 | 0.3250 | 1 | -> |
| SimRNAweb | 1 | 20.392 | 23.897 | 0.853 | 0.973 | 0.000 | 0.816 | 95.730 | 3.03e-05 | 23.32 | 0.3970 | 1 | -> |
| GeneSilico1 | 1 | 20.433 | 22.902 | 0.892 | 0.987 | 0.000 | 0.856 | 0.000 | 3.33e-05 | 21.06 | 0.3970 | 1 | -> |
| SoutheRNA | 9 | 20.451 | 20.451 | -1.000 | - | - | - | 127.040 | 3.47e-05 | 20.78 | 0.2990 | 1 | -> |
| RNAComposer | 1 | 20.546 | 23.296 | 0.882 | 0.973 | 0.000 | 0.853 | 13.890 | 4.33e-05 | 20.89 | 0.3870 | 1 | -> |
| Chen | 5 | 20.570 | 24.486 | 0.840 | 0.987 | 0.000 | 0.782 | 0.000 | 4.58e-05 | 19.64 | 0.2950 | 1 | -> |
| SoutheRNA | 1 | 20.575 | 24.597 | 0.837 | 0.946 | 0.000 | 0.797 | 144.890 | 4.63e-05 | 21.27 | 0.3820 | 1 | -> |
| Yang | 4 | 20.636 | 33.090 | 0.624 | 0.649 | 0.000 | 0.685 | 53.470 | 5.32e-05 | 32.41 | 0.3040 | 1 | -> |
| Ding | 3 | 20.745 | 24.189 | 0.858 | 0.960 | 0.000 | 0.817 | 9.380 | 6.81e-05 | 17.43 | 0.3780 | 1 | -> |
| SoutheRNA | 6 | 21.219 | 24.905 | 0.852 | 0.973 | - | 0.797 | 96.430 | 1.92e-04 | 19.49 | 0.3950 | 1 | -> |
| Szachniuk | 5 | 21.417 | 24.193 | 0.885 | 0.987 | 0.000 | 0.844 | 6.250 | 2.89e-04 | 21.83 | 0.3270 | 1 | -> |
| SoutheRNA | 2 | 21.446 | 26.747 | 0.802 | 0.935 | 0.000 | 0.741 | 78.820 | 3.07e-04 | 22.18 | 0.3210 | 1 | -> |
| Chen | 9 | 21.596 | 24.791 | 0.871 | 0.946 | 0.000 | 0.848 | 0.000 | 4.16e-04 | 20.18 | 0.3300 | 1 | -> |
| Zhou | 5 | 21.756 | 129.201 | 0.168 | - | 0.000 | 0.236 | 5.560 | 5.71e-04 | 28.47 | 0.4370 | 1 | -> |
| Perez | 6 | 21.806 | 21.806 | -1.000 | - | - | - | 1.040 | 6.29e-04 | 22.76 | 0.3310 | 1 | -> |
| Perez | 7 | 21.888 | 21.888 | -1.000 | - | - | - | 0.690 | 7.37e-04 | 21.24 | 0.2490 | 1 | -> |
| Zhou | 2 | 21.916 | 21.916 | -1.000 | - | - | - | 9.380 | 7.77e-04 | 28.83 | 0.3760 | 1 | -> |
| Zhou | 1 | 21.994 | 166.615 | 0.132 | 0.000 | 0.000 | 0.190 | 0.690 | 9.01e-04 | 40.93 | 0.3750 | 1 | -> |
| Perez | 2 | 22.100 | 27.686 | 0.798 | 0.946 | 0.000 | 0.759 | 2.430 | 1.10e-03 | 21.14 | 0.3180 | 1 | -> |
| SimRNAweb | 4 | 22.273 | 26.538 | 0.839 | 0.973 | 0.000 | 0.784 | 77.350 | 1.51e-03 | 21.21 | 0.3890 | 1 | -> |
| Zhou | 4 | 22.277 | 22.277 | -1.000 | - | - | - | 17.710 | 1.52e-03 | 23.96 | 0.3930 | 1 | -> |
| Yang | 2 | 22.309 | 26.922 | 0.829 | 0.903 | 0.000 | 0.806 | 9.380 | 1.61e-03 | 20.29 | 0.2940 | 1 | -> |
| Chen | 6 | 22.787 | 26.221 | 0.869 | 1.000 | 0.000 | 0.822 | 0.000 | 3.68e-03 | 20.09 | 0.2730 | 1 | -> |
| Dokholyan | 5 | 22.847 | 45.081 | 0.507 | 0.242 | 0.000 | 0.664 | 149.280 | 4.06e-03 | 24.01 | 0.2580 | 1 | -> |
| Zhou | 3 | 22.847 | 157.821 | 0.145 | 0.162 | 0.000 | 0.191 | 10.070 | 4.06e-03 | 39.91 | 0.3790 | 1 | -> |
| Dfold | 5 | 23.037 | 42.112 | 0.547 | 0.307 | 0.000 | 0.682 | 149.980 | 5.52e-03 | 23.06 | 0.2130 | 1 | -> |
| DasEMinfo | 5 | 23.038 | 27.761 | 0.830 | 0.974 | 0.000 | 0.784 | 8.330 | 5.53e-03 | 17.96 | 0.3100 | 1 | -> |
| Dokholyan | 4 | 23.211 | 44.212 | 0.525 | 0.237 | 0.000 | 0.684 | 130.860 | 7.24e-03 | 23.49 | 0.2310 | 1 | -> |
| Ding | 5 | 23.301 | 28.310 | 0.823 | 0.946 | - | 0.762 | 6.250 | 8.32e-03 | 18.78 | 0.2860 | 1 | -> |
| Xiao | 1 | 23.926 | 30.629 | 0.781 | 0.889 | 0.000 | 0.752 | 4.170 | 2.03e-02 | 23.53 | 0.2830 | 1 | -> |