Szachniuk group is from the Institute of Bioorganic Chemistry, Polish Academy of Sciences, Adamiak is from the Institute of Bioorganic Chemistry, Polish Academy of Sciences. </br>(Click here to find more information about Szachniuk Group) </br>

Publications:

  1. Magnus M, Antczak M, Zok T, Wiedemann J, Lukasiak P, Cao Y, Bujnicki JM, Westhof E, Szachniuk M, Miao Z. RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools. Nucleic Acids Res. 2020 Jan 24;48(2):576-588.
  2. Popenda M, Szachniuk M, Antczak M, Purzycka KJ, Lukasiak P, Bartol N, Blazewicz J, Adamiak RW. Automated 3D structure composition for large RNAs. Nucleic Acids Res. 2012 Aug;40(14):e112.
  3. Sarzynska J, Popenda M, Antczak M, Szachniuk M. RNA tertiary structure prediction using RNAComposer in CASP15. Proteins. 2023 Dec;91(12):1790-1799.
  4. Antczak M, Popenda M, Zok T, Zurkowski M, Adamiak RW, Szachniuk M. New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation. Bioinformatics. 2018 Apr 15;34(8):1304-1312.
  5. Lukasiak P, Antczak M, Ratajczak T, Bujnicki JM, Szachniuk M, Adamiak RW, Popenda M, Blazewicz J. RNAlyzer–novel approach for quality analysis of RNA structural models. Nucleic Acids Res. 2013 Jul;41(12):5978-90.
  6. Szachniuk, M. RNApolis: Computational platform for RNA structure analysis. Found. Comput. Decision Sci. 44, 241–257 (2019).
  7. Wiedemann J, Kaczor J, Milostan M, Zok T, Blazewicz J, Szachniuk M, Antczak M. RNAloops: a database of RNA multiloops. Bioinformatics. 2022 Sep 2;38(17):4200-4205. doi: 10.1093/bioinformatics/btac484. PMID: 35809063; PMCID: PMC9438955.
  8. Zok T, Kraszewska N, Miskiewicz J, Pielacinska P, Zurkowski M, Szachniuk M. ONQUADRO: a database of experimentally determined quadruplex structures. Nucleic Acids Res. 2022 Jan 7;50(D1):D253-D258.
  9. Antczak M, Popenda M, Zok T, Sarzynska J, Ratajczak T, Tomczyk K, Adamiak RW, Szachniuk M. New functionality of RNAComposer: an application to shape the axis of miR160 precursor structure. Acta Biochim Pol. 2016;63(4):737-744.
  10. Popenda M, Zok T, Sarzynska J, Korpeta A, Adamiak RW, Antczak M, Szachniuk M. Entanglements of structure elements revealed in RNA 3D models. Nucleic Acids Res. 2021 Sep 27;49(17):9625-9632.
  11. Carrascoza F, Antczak M, Miao Z, Westhof E, Szachniuk M. Evaluation of the stereochemical quality of predicted RNA 3D models in the RNA-Puzzles submissions. RNA. 2022 Feb;28(2):250-262.